Gabriele Girelli
Sr. Computational Biologist
Stockholm, Sweden
Summary
👤
Senior🎓
Top SchoolGabriele Girelli is a Stockholm-based Sr. Computational Biologist with a decade of experience turning complex biology into scalable, data-driven solutions. At 10x Genomics, he led spatial transcriptomics initiatives, helping bring Xenium's cell segmentation and protein kits to life, and he currently advances analyses at Cubase Bio. His PhD and Postdoctoral work at Karolinska Institutet fused bioimaging and quantitative biology to reveal nuclear 3D architecture principles and their influence on gene expression. He has a proven track record across academia and industry, spanning genome-scale data, imaging, and software to drive biological discovery. With a background in cellular and molecular biotechnologies and early iGEM experience, he combines hands-on programming with experimental insight to shape next-generation biotech solutions.
11 years of coding experience
Doctor of Philosophy - PhD, Bioinformatics, Passed, Doctor of Philosophy - PhD, Bioinformatics, Passed at Karolinska InstituteMaster's degree, Cellular and Molecular Biotechnologies, 105/110, Master's degree, Cellular and Molecular Biotechnologies, 105/110 at Università degli Studi di Trento
Italian, English, svedese
Github Skills (171)
probe10
image-processing10
forge10
microscopy10
radial10
fastq-files10
sodium10
nis10
biomart10
computer-vision10
r-package10
curve10
trim10
image10
duplex10
Programming languages (11)
Github contributions (5)
ggirelli/SpectraScope
May 2019 - Jun 2019
Interactive interface to visualize spectra and filter sets for any microscope. Easily customizable.
Contributions:4 releases, 77 commits, 2 PRs in 1 month
pythonmicroscopevisualizeinteractive-interfacecustomizable
ggirelli/ood-fish
Mar 2017 - Apr 2019
Contributions:60 commits, 24 pushes, 1 branch in 2 years 1 month
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