Top Software Engineers in

Computational Genomics and Bioinformatics Workflow Development

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bioinformatics
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genomics
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workflow
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python
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ngs

Computational Genomics and Bioinformatics Workflow Development encompasses the application and development of computational workflows and tools to analyze genomic data. It leverages programming languages like Python and technologies such as Docker, Cloud, and various workflow engines to improve and automate the processing of DNA sequencing data, aiding in areas like variant calling, single-cell genomics, and more. Essential for advancing personalized medicine and understanding biological complexity, this field combines aspects of computer science, statistics, and biology.

Ranks are based on the open source contributions and reassessed every 30 days

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1

Bjorn Gruning
Scientific Researcher bei Universität Freiburg at Universitat Freiburg
/
Germany
Rock Star
12 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
galaxyproject/training-material
427 reviews, 1176 commits, 921 PRs in 7 years 8 months
bgruening/galaxytools
2 releases, 403 reviews, 3034 commits in 10 years 1 month
usegalaxy-eu/usegalaxy-eu-tools
143 reviews, 745 commits, 619 PRs in 5 years 10 months
Top skills
Score
cdn
10
interaction
10
identifier
10

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2

Andreas Sjödin
Senior Integration Developer at Calabrio Inc
/
Sweden
Rock Star
10 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
606 reviews, 1493 commits, 2529 PRs in 6 years 5 months
conda-forge/staged-recipes
46 commits, 12 PRs, 28 comments in 2 years 10 months
adrlar/CanSNPer
5 releases, 29 commits, 19 PRs in 6 years 4 months
Top skills
Score
recipes
10
conda
10
package-management
10

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3

Ryan Dale
Scientific Information Officer & Bioinformatics Core Director at NIH/NICHD
/
United States
Rock Star
14 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
250 reviews, 1401 commits, 957 PRs in 7 years 1 month
lcdb/lcdb-wf
5 releases, 40 reviews, 1963 commits in 6 years 1 month
daler/pybedtools
4 releases, 1638 commits, 119 PRs in 12 years 7 months
Top skills
Score
jstree
10
os-agnostic
10
rna-seq
10

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4

Johannes Köster
Research group leader at University of Duisburg-Essen
/
Germany
Rock Star
11 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
312 reviews, 1327 commits, 1284 PRs in 7 years 5 months
varlociraptor/varlociraptor
42 releases, 91 reviews, 1178 commits in 6 years 7 months
snakemake/snakemake
73 releases, 710 reviews, 2679 commits in 9 years 6 months
Top skills
Score
vega-lite
10
filter-expression
10
command-line
10

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5

Elmar Pruesse
Bioinformatics Analyst at National Jewish Health
/
Germany
Rock Star
10 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
15 reviews, 1051 commits, 2313 PRs in 6 years
epruesse/ymp
6 releases, 1850 commits, 99 PRs in 6 years 2 months
bioconda/bioconda-utils
4 releases, 1207 commits, 130 PRs in 3 years 7 months
Top skills
Score
iot
10
genome
10
home-automation
10

#

6

Paolo Di Tommaso
CTO & Co-founder at Seqera Labs
/
Spain
Rock Star
14 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
nextflow-io/nextflow
252 releases, 1247 reviews, 5657 commits in 9 years 11 months
seqeralabs/nf-tower
5 reviews, 986 commits, 37 PRs in 1 year 2 months
nextflow-io/website
57 reviews, 396 commits, 64 PRs in 8 years 10 months
Top skills
Score
multiple-versions
10
java-7
10
go
10

#

7

Devon Ryan
Head of scientific consulting, Selector business unit, Genedata AG at Genedata
/
Germany
Rock Star
10 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
YuSugihara/bioconda-recipes
108 commits, 3 pushes in 3 months
deeptools/deepTools
41 releases, 1545 commits, 326 PRs in 5 years 4 months
dpryan79/libBigWig
23 releases, 1 review, 172 commits in 6 years 11 months
Top skills
Score
package-management
10
rnaseq
10
mappings
10

#

8

Brad Chapman
Principal Data Science Architect at Ginkgo Bioworks, Inc.
/
United States
Rock Star
24 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
bcbio/bcbio-nextgen
5009 commits, 207 PRs, 2669 pushes in 9 years 7 months
chapmanb/cloudbiolinux
1752 commits, 68 PRs, 510 pushes in 11 years 5 months
bioconda/bioconda-recipes
1 review, 840 commits, 1024 PRs in 4 years 7 months
Top skills
Score
sequencing
10
submit
10
reader
10

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9

Helena Rasche
Employed at Erasmus Medical Center
/
Tanzania, United Republic of
Rock Star
12 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
galaxyproject/training-material
30 releases, 1869 reviews, 4723 commits in 5 years 8 months
galaxyproject/tools-iuc
62 reviews, 824 commits, 279 PRs in 7 years 11 months
galaxyproject/gxadmin
5 releases, 105 reviews, 787 commits in 4 years 4 months
Top skills
Score
cloud-infrastructure
10
kebab-case
10
infrastructure-as-code
10

#

10

Jillian Rowe
Bioinformatics Infrastructure Consultant. Deploy all the (Bioinformatics) Related Things! at Dabble Of Devops
/
United States
Rock Star
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
1 review, 644 commits, 316 PRs in 3 years 6 months
conda-forge/staged-recipes
146 commits, 13 PRs, 76 comments in 11 months
dabble-of-devops-bioanalyze/bioanalyze-docker-images
169 commits, 5 PRs, 152 pushes in 11 months
Top skills
Score
sequencing
10
python
10
api
10

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11

Christopher Tomkins-Tinch
Software Engineer at Software And Hardware Design Consulting
/
United States
Rock Star
13 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
4 reviews, 598 commits, 507 PRs in 7 years 1 month
broadinstitute/viral-ngs
78 releases, 1538 commits, 845 PRs in 5 years 7 months
broadinstitute/viral-pipelines
3 releases, 32 reviews, 329 commits in 2 years 10 months
Top skills
Score
command-line-tools
10
macos-big-sur
10
bitbar
10

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12

Adam Caprez
Associate Director of Research Development & Engagement at Holland Computing Center
/
United States
Rock Star
10 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
unlhcc/deployed-conda-envs
1391 commits, 728 pushes, 1 branch in 4 years 10 months
unlhcc/crane-modules
970 commits, 235 pushes, 1 branch in 7 years 1 month
unlhcc/hcc-conda-recipes
1501 commits, 3 PRs, 455 pushes in 8 years 5 months
Top skills
Score
recipes
10
package-management
10
forge
10

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13

Christian Brueffer
Founder and Principal Consultant at InSilico Consulting AB | Bioinformatics | Data Science | Medical Science | Biomedicine | Oncology
/
Sweden
Rock Star
21 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
migueldeicaza/unix-history-repo
2225 commits in 13 years 2 months
biopython/biopython
169 commits, 9 PRs, 43 comments in 9 years 7 months
cbrueffer/cbrueffer.github.io
73 commits, 3 PRs, 171 pushes in 2 years 11 months
Top skills
Score
numba
10
javascript
10
tuple
10

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14

Saskia Hiltemann
Post-Doctoral Bioinformatician at Albert-Ludwigs-Universität Freiburg
/
Netherlands
Rock Star
10 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
galaxyproject/training-material
2 releases, 898 reviews, 2990 commits in 6 years 4 months
shiltemann/CTF-writeups-public
553 commits, 5 PRs, 147 pushes in 7 years 5 months
gallantries/video-library
16 reviews, 545 commits, 26 PRs in 1 year 2 months
Top skills
Score
versioning
10
bioconda
10
wrapper
10

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15

Bérénice Batut
Research Engineer, Microbiome data analysis & Training | Co-founder and -director, OLS at Open Life Science
/
France
Rock Star
TOP CONTRIBUTIONS TO PROJECTS
galaxyproject/training-material
210 reviews, 1853 commits, 633 PRs in 6 years 6 months
galaxyproject/tools-iuc
163 reviews, 809 commits, 178 PRs in 6 years 11 months
open-life-science/open-life-science.github.io
337 reviews, 429 commits, 361 PRs in 3 years 5 months
Top skills
Score
versioning
10
netscaler
10
conda
10

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16

ArneKr
/
Rock Star
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
375 commits, 605 PRs, 162 pushes in 3 years 4 months
ArneKr/bioconda-recipes
1 PR, 120 pushes, 2312 branches in 1 year 3 months
conda-forge/staged-recipes
5 commits, 19 PRs, 1 comment in 6 months
Top skills
Score
recipes
10
submit
10
package-management
10

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17

Anthony David
Cyber Security Engineer at GenOuest
/
France
Rock Star
13 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
galaxyproject/training-material
80 reviews, 281 commits, 84 PRs in 6 years 1 month
bioconda/bioconda-recipes
77 reviews, 299 commits, 382 PRs in 6 years 10 months
galaxyproject/tools-iuc
106 reviews, 559 commits, 284 PRs in 7 years 2 months
Top skills
Score
uwsgi
10
gwt
10
javascript-client
10

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18

Mathias Haudgaard
Senior Engineer @ The LEGO Group at The Lego
/
Denmark
Rock Star
TOP CONTRIBUTIONS TO PROJECTS
conda-forge/staged-recipes
284 commits, 279 PRs, 17 comments in 3 months
bioconda/bioconda-recipes
262 commits, 453 PRs, 152 pushes in 1 year 2 months
MathiasHaudgaard/AndroidProject
42 commits, 19 PRs, 29 pushes in 1 month
Top skills
Score
queuing
10
pulsar
10
apache
10

#

19

Thomas Cokelaer
Bioinformatician at Institut Pasteur
/
France
Rock Star
16 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
cokelaer/bioservices
21 releases, 3 reviews, 1090 commits in 10 years 2 months
CancerRxGene/gdsctools
2 releases, 2 reviews, 954 commits in 6 years 1 month
openalea/openalea
799 commits, 3 comments, 3 issues in 6 years 1 month
Top skills
Score
evaluation
10
python
10
ecology
10

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